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Overview

Project website pagure.io/fedora-docs-l10n/neurofedora
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Mailing list for translators: <trans@lists.fedoraproject.org
Translation license Creative Commons Attribution Share Alike 3.0 Unported
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Source code repository ssh://pagure.io/fedora-docs-l10n/neurofedora.git
Repository branch master
Last remote commit automatic update of pot/po files b73823d9
♪ I'm a bot, bot, bot ♪ authored a year ago
Last commit in Weblate Translated using Weblate (Spanish) e6ee4b9d
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Weblate repository https://translate.fedoraproject.org/git/fedora-docs-l10n-neurofedora/nav/
File mask po/*/master/pages/compneuro-tools.po
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Last change Nov. 22, 2023, 10:05 p.m.
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3 weeks ago

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Resource updated
File “po/it/master/pages/compneuro-tools.po” was added. 11 months ago
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Software that is in the queue for inclusion is listed link:https://pagure.io/neuro-sig/NeuroFedora/issues?tags=F%3A+Computational+neuroscience[here].
 
11 months ago
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This link:https://pagure.io/fedora-comps/blob/40299817078d1d01e5d68121b05de28d3e1faf29/f/comps-f35.xml.in#_4073[pulls in]: bionetgen, calcium-calculator, COPASI, genesis-simulator, moose, python3-brian2, python3-nest, python3-netpyne, python3-neuron, python3-PyLEMS, python3-pynn, and smoldyn.
 
11 months ago
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sudo dnf groupinstall --with-optional "Neuron Modelling Simulators" --skip-broken
 
11 months ago
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While each tool can be installed individually, for convenience, a "package group" has also been set up. Installing the group installs all the tools in it:
 
11 months ago
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Installing multiple tools at once
 
11 months ago
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| link:https://src.fedoraproject.org/rpms/arbor[Arbor]
| `sudo dnf install arbor-{,mpich,openmpi}`
| The Arbor multi-compartment neural network simulation library.

| link:https://src.fedoraproject.org/rpms/auryn[Auryn]
| `sudo dnf install auryn-{mpich,openmpi}`
| A simulator for spiking neural networks with plastic synapses. Only built with xref:mpi.adoc[MPI support].

| link:https://src.fedoraproject.org/rpms/bionetgen[bionetgen]
| `sudo dnf install bionetgen`
| Software for rule-based modeling of biochemical systems.

| link:https://copr.fedorainfracloud.org/coprs/g/neurofedora/neurofedora-extra/package/python-brian/[Brian (v1)]
| Please see xref:copr.adoc[COPR].
| A clock-driven simulator for spiking neural networks.

| link:https://src.fedoraproject.org/rpms/python-brian2[Brian2]
| `sudo dnf install python3-brian2`
| A clock-driven simulator for spiking neural networks.

| link:https://src.fedoraproject.org/rpms/calcium-calculator[CalC: Calcium calculator]
| `sudo dnf install calcium-calculator`
| A modeling tool for simulating intracellular calcium diffusion and buffering.

| link:https://src.fedoraproject.org/rpms/COPASI[COPASI]
| `sudo dnf install COPASI`
| A software application for simulation and analysis of biochemical networks and their dynamics.

| link:https://src.fedoraproject.org/rpms/genesis-simulator[Genesis]
| `sudo dnf install genesis-simulator`
| The GEneral NEural Simulation System.

| link:https://src.fedoraproject.org/rpms/jlems[jLEMS]
| `sudo dnf install jlems`
| Java interpreter for the Low Entropy Model Specification (LEMS) language.

| link:https://src.fedoraproject.org/rpms/mod2c[mod2c]
| `sudo dnf install mod2c`
| NMODL to C adapted for CoreNEURON simulator.

| link:https://src.fedoraproject.org/rpms/moose[Moose]
| `sudo dnf install moose`
| Multiscale Neuroscience and Systems Biology Simulator.

| link:https://src.fedoraproject.org/rpms/MUSIC[MUSIC]
| `sudo dnf install MUSIC`
| MUSIC, the MUltiSimulation Coordinator.

| link:https://src.fedoraproject.org/rpms/python-neatdend[NEAT]
| `sudo dnf install python3-neatdend`
| A python library for the study, simulation and simplification of morphological neuron models.

| link:https://src.fedoraproject.org/rpms/nest[NEST]
| `sudo dnf install python3-nest nest`
| The neural simulation tool. Built with MPI support. Please see link:https://src.fedoraproject.org/rpms/nest[this page] for details on installation.

| link:https://src.fedoraproject.org/rpms/python-netpyne[NetPyNE]
| `sudo dnf install python3-netpyne`
| A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

| link:https://src.fedoraproject.org/rpms/neuron[NEURON]
| `sudo dnf install python3-neuron neuron neuron-devel`
| A flexible and powerful simulator of neurons and networks. Currently not built with xref:mpi.adoc[MPI support]. `/usr/bin/oc` has been renamed to `/usr/bin/hoc` (link:https://bugzilla.redhat.com/show_bug.cgi?id=1696118[rhbz 1696118]).

| link:https://src.fedoraproject.org/rpms/neurord[neurord]
| `sudo dnf install neurord`
| Stochastic reaction-diffusion simulator.

| link:https://src.fedoraproject.org/rpms/python-neurotune[neurotune]
| `sudo dnf install python3-neurotune`
| A package for optimizing electical models of excitable cells.

| link:https://src.fedoraproject.org/rpms/python-niapy[NiaPy]
| `sudo dnf install python3-niapy`
| Python microframework for building nature-inspired algorithms.

| link:https://src.fedoraproject.org/rpms/python-PyLEMS[PyLEMS]
| `sudo dnf install python3-PyLEMS`
| Python interpreter for the Low Entropy Model Specification (LEMS) language.

| link:https://src.fedoraproject.org/rpms/python-pynn[PyNN]
| `sudo dnf install python3-pynn`
| Simulator-independent specification of neuronal network models.

| link:https://src.fedoraproject.org/rpms/libsonata[libsonata]
| `sudo dnf install python3-libsonata libsonata`
| Python and C++ interface to the SONATA format.

| link:https://src.fedoraproject.org/rpms/python-lfpy[LFPy]
| `sudo dnf install python3-lfpy`
| Module for extra cellular potentials of multicompartment neuron models on NEURON.

| link:https://src.fedoraproject.org/rpms/python-lfpykit[LFPykit]
| `sudo dnf install python3-lfpykit`
| Freestanding implementations of electrostatic forward models incorporated in LFPy.

| link:https://src.fedoraproject.org/rpms/python-ratinabox[RatInABox]
| `sudo dnf install python3-ratinabox`
| A package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

| link:https://src.fedoraproject.org/rpms/python-sciunit[SciUnit]
| `sudo dnf install python3-sciunit`
| A Test-Driven Framework for Formally Validating Scientific Models Against Data.

| link:https://src.fedoraproject.org/rpms/python-steps[STEPS]
| `sudo dnf install python3-steps{,-mpich,-openmpi}`
| STochastic Engine for Pathway Simulation.

| link:https://src.fedoraproject.org/rpms/smoldyn[smoldyn]
| `sudo dnf install smoldyn`
| A particle-based spatial stochastic simulator.

 
11 months ago
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String updated in the repository
The following tools are among the software currently available in NeuroFedora:
 
11 months ago
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xref:install-media.adoc[Installation media] and xref:containers.adoc[container image] available!
 
11 months ago
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Software for computational neuroscience
 
11 months ago
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