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Translation license CC-BY-SA-3.0 nav fedora-docs-l10n/neurofedora master/pages/overview master/antora.yml master/pages/install-media master/pages/contributing master/pages/utilities master/pages/copr master/pages/related-links master/pages/citations master/pages/imaging-tools master/pages/excludedtools master/pages/containers master/pages/software master/pages/latex master/pages/installing-software master/pages/mpi master/pages/analysis-tools master/pages/communicating master/pages/excludedfosstools master/pages/compneuro-tools master/pages/_partials/3rdparty-message

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Untranslated strings 100% 317 100% 7,880 100% 74,089
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fedora-docs-l10n/neurofedora / master/pages/compneuro-tools — French

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fedora-docs-l10n/neurofedora / master/pages/compneuro-tools — French

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fedora-docs-l10n/neurofedora / master/pages/compneuro-tools — French

| link:https://src.fedoraproject.org/rpms/arbor[Arbor]
| `sudo dnf install arbor-{,mpich,openmpi}`
| The Arbor multi-compartment neural network simulation library.

| link:https://src.fedoraproject.org/rpms/auryn[Auryn]
| `sudo dnf install auryn-{mpich,openmpi}`
| A simulator for spiking neural networks with plastic synapses. Only built with xref:mpi.adoc[MPI support].

| link:https://src.fedoraproject.org/rpms/bionetgen[bionetgen]
| `sudo dnf install bionetgen`
| Software for rule-based modeling of biochemical systems.

| link:https://copr.fedorainfracloud.org/coprs/g/neurofedora/neurofedora-extra/package/python-brian/[Brian (v1)]
| Please see xref:copr.adoc[COPR].
| A clock-driven simulator for spiking neural networks.

| link:https://src.fedoraproject.org/rpms/python-brian2[Brian2]
| `sudo dnf install python3-brian2`
| A clock-driven simulator for spiking neural networks.

| link:https://src.fedoraproject.org/rpms/calcium-calculator[CalC: Calcium calculator]
| `sudo dnf install calcium-calculator`
| A modeling tool for simulating intracellular calcium diffusion and buffering.

| link:https://src.fedoraproject.org/rpms/COPASI[COPASI]
| `sudo dnf install COPASI`
| A software application for simulation and analysis of biochemical networks and their dynamics.

| link:https://src.fedoraproject.org/rpms/genesis-simulator[Genesis]
| `sudo dnf install genesis-simulator`
| The GEneral NEural Simulation System.

| link:https://src.fedoraproject.org/rpms/jlems[jLEMS]
| `sudo dnf install jlems`
| Java interpreter for the Low Entropy Model Specification (LEMS) language.

| link:https://src.fedoraproject.org/rpms/mod2c[mod2c]
| `sudo dnf install mod2c`
| NMODL to C adapted for CoreNEURON simulator.

| link:https://src.fedoraproject.org/rpms/moose[Moose]
| `sudo dnf install moose`
| Multiscale Neuroscience and Systems Biology Simulator.

| link:https://src.fedoraproject.org/rpms/MUSIC[MUSIC]
| `sudo dnf install MUSIC`
| MUSIC, the MUltiSimulation Coordinator.

| link:https://src.fedoraproject.org/rpms/nest[NEST]
| `sudo dnf install python3-nest nest`
| The neural simulation tool. Built with MPI support. Please see link:https://src.fedoraproject.org/rpms/nest[this page] for details on installation.

| link:https://src.fedoraproject.org/rpms/python-netpyne[NetPyNE]
| `sudo dnf install python3-netpyne`
| A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

| link:https://src.fedoraproject.org/rpms/neuron[NEURON]
| `sudo dnf install python3-neuron neuron neuron-devel`
| A flexible and powerful simulator of neurons and networks. Currently not built with xref:mpi.adoc[MPI support]. `/usr/bin/oc` has been renamed to `/usr/bin/hoc` (link:https://bugzilla.redhat.com/show_bug.cgi?id=1696118[rhbz 1696118]).

| link:https://src.fedoraproject.org/rpms/neurord[neurord]
| `sudo dnf install neurord`
| Stochastic reaction-diffusion simulator.

| link:https://src.fedoraproject.org/rpms/python-neurotune[neurotune]
| `sudo dnf install python3-neurotune`
| A package for optimizing electical models of excitable cells.

| link:https://src.fedoraproject.org/rpms/python-niapy[NiaPy]
| `sudo dnf install python3-niapy`
| Python microframework for building nature-inspired algorithms.

| link:https://src.fedoraproject.org/rpms/python-PyLEMS[PyLEMS]
| `sudo dnf install python3-PyLEMS`
| Python interpreter for the Low Entropy Model Specification (LEMS) language.

| link:https://src.fedoraproject.org/rpms/python-pynn[PyNN]
| `sudo dnf install python3-pynn`
| Simulator-independent specification of neuronal network models.

| link:https://src.fedoraproject.org/rpms/libsonata[libsonata]
| `sudo dnf install python3-libsonata libsonata`
| Python and C++ interface to the SONATA format.

| link:https://src.fedoraproject.org/rpms/python-lfpy[LFPy]
| `sudo dnf install python3-lfpy`
| Module for extra cellular potentials of multicompartment neuron models on NEURON.

| link:https://src.fedoraproject.org/rpms/python-lfpykit[LFPykit]
| `sudo dnf install python3-lfpykit`
| Freestanding implementations of electrostatic forward models incorporated in LFPy.

| link:https://src.fedoraproject.org/rpms/python-sciunit[SciUnit]
| `sudo dnf install python3-sciunit`
| A Test-Driven Framework for Formally Validating Scientific Models Against Data.

| link:https://src.fedoraproject.org/rpms/python-steps[STEPS]
| `sudo dnf install python3-steps{,-mpich,-openmpi}`
| STochastic Engine for Pathway Simulation.

| link:https://src.fedoraproject.org/rpms/smoldyn[smoldyn]
| `sudo dnf install smoldyn`
| A particle-based spatial stochastic simulator.

 
a month ago
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fedora-docs-l10n/neurofedora / master/pages/analysis-tools — French

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fedora-docs-l10n/neurofedora / master/pages/analysis-tools — French

The "po/fr/master/pages/analysis-tools.po" file was changed. a month ago
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fedora-docs-l10n/neurofedora / master/pages/analysis-tools — French

| link:https://src.fedoraproject.org/rpms/python-amply[amply]
| `sudo dnf install python3-amply`
| A Python package for AMPL/GMPL datafile parsing.

| link:https://src.fedoraproject.org/rpms/R-arules[arules]
| `sudo dnf install R-arules`
| Provides the infrastructure for representing, manipulating and analyzing transaction data and patterns.

| link:https://src.fedoraproject.org/rpms/octave-brain2mesh[brain2mesh]
| `sudo dnf install octave-brain2mesh`
| A fully automated high-quality brain tetrahedral mesh generation toolbox.

| link:https://src.fedoraproject.org/rpms/catch22[catch22]
| `sudo dnf install catch22 python3-catch22`
| catch22 is a collection of 22 time-series features coded in C.

| link:https://src.fedoraproject.org/rpms/python-contextualbandits[contextualbandits]
| `sudo dnf install python3-contextualbandits`
| Python implementations of contextual bandits algorithms.

| link:https://src.fedoraproject.org/rpms/python-cyipopt[cyipopt]
| `sudo dnf install python3-cyipopt`
| Cython interface for the interior point optimzer IPOPT.

| link:https://src.fedoraproject.org/rpms/python-editdistance[editdistance]
| `sudo dnf install python3-editdistance`
| A fast implementation of the edit distance (Levenshtein distance) in Python.

| link:https://src.fedoraproject.org/rpms/python-efel[efel]
| `sudo dnf install python3-efel`
| Electrophys Feature Extraction Library.

| link:https://src.fedoraproject.org/rpms/python-elephant[elephant]
| `sudo dnf install python3-elephant`
| A package for analysis of electrophysiology data in Python.

| link:https://src.fedoraproject.org/rpms/fasttrack[FastTrack]
| `sudo dnf install fasttrack fasttrack-cli`
| Application designed to track multiple objects in video recording.

| link:https://src.fedoraproject.org/rpms/python-identify[identify]
| `sudo dnf install python3-identify`
| File identification library for Python.

| link:https://src.fedoraproject.org/rpms/octave-iso2mesh[iso2mesh]
| `sudo dnf install octave-iso2mesh`
| A medical-image based 3-D mesh generation and analysis toolkit.

| link:https://src.fedoraproject.org/rpms/octave-mcxlab[mcxlab]
| `sudo dnf install octave-mcxlab`
| A 3-D Monte Carlo photon transport simulation toolbox.

| link:https://src.fedoraproject.org/rpms/python-meautility[MEAUtility]
| `sudo dnf install python-meautility`
| Python package for multi-electrode array (MEA) handling and stimulation.

| link:https://src.fedoraproject.org/rpms/mmc[mmc]
| `sudo dnf install mmc octave-mmclab mmc-demos mmclab-demos`
| A 3-D mesh-based Monte Carlo photon transport simulator.

| link:https://src.fedoraproject.org/rpms/python-mne[mne]
| `sudo dnf install python3-mne`
| Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis.

| link:https://src.fedoraproject.org/rpms/python-nashpy[Nashpy]
| `sudo dnf install python3-nashpy`
| A library for the computation of Nash equilibria in two player games.

| link:https://src.fedoraproject.org/rpms/python-neurodsp[neurodsp]
| `sudo dnf install python3-neurodsp`
| A Python package to analyze and simulate neural time series, using digital signal processing.

| link:https://src.fedoraproject.org/rpms/python-neurosynth[neurosynth]
| `sudo dnf install python3-neurosynth`
| Large-scale synthesis of functional neuroimaging data.

| link:https://src.fedoraproject.org/rpms/python-niaaml[NiaAML]
| `sudo dnf install python3-niaaml`
| AutoML in Python.

| link:https://src.fedoraproject.org/rpms/python-niaarm[NiaARM]
| `sudo dnf install python3-niaarm`
| A minimalistic framework for Numerical Association Rule Mining.

| link:https://src.fedoraproject.org/rpms/python-niaclass[NiaClass]
| `sudo dnf install python3-niaclass`
| Framework for solving classification tasks using nature-inspired algorithms.

| link:https://src.fedoraproject.org/rpms/python-niapy[NiaPy]
| `sudo dnf install python3-niapy`
| A Python package for solving optimization problems.

| link:https://src.fedoraproject.org/rpms/python-nitime[nitime]
| `sudo dnf install python3-nitime`
| Timeseries analysis for neuroscience data.

| link:https://src.fedoraproject.org/rpms/python-odml[odML]
| `sudo dnf install python3-odml`
| File-format to store metadata in an organized way.

| link:https://src.fedoraproject.org/rpms/openmeeg[openmeeg]
| `sudo dnf install openmeeg`
| A C++ package for solving the forward problems of electroencephalography (EEG) and magnetoencephalography (MEG).

| link:https://src.fedoraproject.org/rpms/python-pingouin[pingouin]
| `sudo dnf install python3-pingouin`
| Statistical package in Python based on Pandas.

| link:https://src.fedoraproject.org/rpms/python-probeinterface[probeinterface]
| `sudo dnf install python3-probeinterface`
| Python package to handle probe layout, geometry and wiring to device for neuroscience experiments.

| link:https://src.fedoraproject.org/rpms/python-pyelectro[pyelectro]
| `sudo dnf install python3-pyelectro`
| A Python library for analysis of electrophysiological data.

| link:https://src.fedoraproject.org/rpms/python-pynwb[pynwb]
| `sudo dnf install python3-pynwb`
| A Python package for working with NWB files.

| link:https://src.fedoraproject.org/rpms/python-pyspike[PySpike]
| `sudo dnf install python3-pyspike`
| A Python library for the numerical analysis of spiketrain similarity

| link:https://src.fedoraproject.org/rpms/python-pyswarms[pyswarms]
| `sudo dnf install python3-pyswarms`
| PySwarms is an extensible research toolkit for particle swarm optimization (PSO) in Python.

| link:https://src.fedoraproject.org/rpms/python-pyunicorn[pyunicorn]
| `sudo dnf install python3-pyunicorn`
| Unified complex network and recurrence analysis toolbox

| link:https://src.fedoraproject.org/rpms/python-SALib[SALib]
| `sudo dnf install python3-SALib`
| Sensitivity Analysis Library.

| link:https://src.fedoraproject.org/rpms/shybrid[shybrid]
| `sudo dnf install shybrid`
| GUI for generating hybrid ground-truth spiking data

| link:https://src.fedoraproject.org/rpms/python-sklearn-genetic[sklearn-genetic]
| `sudo dnf install python3-sklearn-genetic`
| A genetic feature selection module for scikit-learn.

| link:https://src.fedoraproject.org/rpms/python-smart_open[smart_open]
| `sudo dnf install python3-smart_open`
| Utils for streaming large files (S3, HDFS, gzip, bz2, and more).

| link:https://src.fedoraproject.org/rpms/python-spyking-circus[Spyking circus]
| `sudo dnf install python3-spyking-circus{-mpich,-openmpi}`
| A fast and scalable solution for spike sorting of large-scale extracellular recordings.

| link:https://src.fedoraproject.org/rpms/python-trimesh[trimesh]
| `sudo dnf install python3-trimesh`
| Import, export, process, analyze and view triangular meshes.

 
a month ago
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fedora-docs-l10n/neurofedora / master/pages/utilities — French

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Resource update

fedora-docs-l10n/neurofedora / master/pages/utilities — French

The "po/fr/master/pages/utilities.po" file was changed. a month ago
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fedora-docs-l10n/neurofedora / master/pages/utilities — French

| link:https://src.fedoraproject.org/rpms/python-autograd [Autograd]
| `sudo dnf install python3-autograd`
| Efficiently computes derivatives of numpy code

| link:https://src.fedoraproject.org/rpms/python-bokeh[Bokeh]
| `sudo dnf install python3-bokeh`
| The Bokeh Visualization Library

| link:https://src.fedoraproject.org/rpms/python-bluepyopt[BluePyOpt]
| `sudo dnf install python3-bluepyopt python3-bluepyopt-doc`
| Blue Brain Python Optimisation Library

| link:https://src.fedoraproject.org/rpms/python-chaospy[chaospy]
| `sudo dnf install python3-chaospy`
| Numerical tool for performing uncertainty quantification using polynomial.

| link:https://src.fedoraproject.org/rpms/python-connection_pool[connection_pool]
| `sudo dnf install python3-connection_pool`
| Thread-safe connection pool for python.

| link:https://src.fedoraproject.org/rpms/python-datalad[datalad]
| `sudo dnf install datalad python3-datalad`
| Keep code, data, containers under control with git and git-annex.

| link:https://src.fedoraproject.org/rpms/python-datrie[datrie]
| `sudo dnf install python3-datrie`
| Super-fast, efficiently stored Trie for Python.

| link:https://src.fedoraproject.org/rpms/earcut-hpp[earcut.hpp]
| `sudo dnf install earcut-hpp-devel`
| C++ port of earcut.js, a fast, header-only polygon triangulation library.

| link:https://src.fedoraproject.org/rpms/edflib[edflib]
| `sudo dnf install edflib`
| C/C++ library to read/write EDF+ and BDF+ files.

| link:https://src.fedoraproject.org/rpms/python-exdir[exdir]
| `sudo dnf install python3-exdir`
| Directory structure standard for experimental pipelines.

| link:https://src.fedoraproject.org/rpms/python-git-changelog[Git-changelog]
| `sudo dnf install python3-git-changelog`
| An automatic Changelog generator using Jinja2 templates. From git logs to change logs.

| link:https://src.fedoraproject.org/rpms/octave[GNU Octave]
| `sudo dnf install octave`
| GNU Octave: Scientific programming language. FOSS, compatible with Matlab scripts.

| link:https://src.fedoraproject.org/rpms/python-graph-tool[Graph Tool]
| `sudo dnf install python3-graph-tool`
| An efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks).

| link:https://src.fedoraproject.org/rpms/gsl-lite[gsl-lite]
| `sudo dnf install gsl-lite-devel`
| A single-file header-only version of ISO C{plus}{plus} Guidelines Support Library (GSL) for C{plus}{plus}98, C{plus}{plus}11, and later.

| link:https://src.fedoraproject.org/rpms/python-hdf5storage[HDF5storage]
| `sudo dnf install python3-hdf5storage`
| Read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files.

| link:https://src.fedoraproject.org/rpms/highfive[HighFive]
| `sudo dnf install highfive-devel`
| A modern header-only C{plus}{plus}11 friendly interface for libhdf5

| link:https://src.fedoraproject.org/rpms/python-inspyred[inspyred]
| `sudo dnf install python3-inspyred`
| Library for bio-inspired computational intelligence.

| link:https://src.fedoraproject.org/rpms/python-interrogate[interrogate]
| `sudo dnf install python3-interrogate`
| Interrogate a codebase for docstring coverage.

| link:https://src.fedoraproject.org/rpms/octave-jsonlab[JSONLab]
| `sudo dnf install octave-jsonlab`
| A JSON/UBJSON/MessagePack encoder/decoder for GNU Octave.

| link:https://src.fedoraproject.org/rpms/python-llvmlite[llvmlite]
| `sudo dnf install python3-llvmlite`
| A lightweight LLVM-Python binding for writing JIT compilers.

| link:https://src.fedoraproject.org/rpms/python-mapbox-earcut[mapbox-earcut]
| `sudo dnf install python3-mapbox-earcut`
| Very fast and quite robust triangulation of 2D polygons.

| link:https://src.fedoraproject.org/rpms/python-matplotlib-venn[matplotlib-venn]
| `sudo dnf install python3-matplotlib-venn`
| Venn diagram plotting routines for Python/Matplotlib.

| link:https://src.fedoraproject.org/rpms/python-missingno[missingno]
| `sudo dnf install python3-missingno`
| Missing data visualization module for Python.

| link:https://src.fedoraproject.org/rpms/morphio[MorphIO]
| `sudo dnf install python3-morphio morphio-devel`
| A python and C++ library for reading and writing neuronal morphologies.

| link:https://src.fedoraproject.org/rpms/python-neurom[NeuroM]
| `sudo dnf install python3-neurom`
| Python toolkit for the analysis and processing of neuron morphologies.

| link:https://src.fedoraproject.org/rpms/python-owl_rl[OWL_RL]
| `sudo dnf install python3-owl_rl`
| OWL-RL and RDFS based RDF Closure inferencing for Python.

| link:https://src.fedoraproject.org/rpms/python-pew[Pew]
| `sudo dnf install python3-pew`
| Virtual environment manager written in pure Python.

| link:https://src.fedoraproject.org/rpms/python-plotly[Plotly]
| `sudo dnf install python3-plotly`
| An open-source, interactive data visualization library for Python.

| link:https://src.fedoraproject.org/rpms/python-pooch[Pooch]
| `sudo dnf install python3-pooch`
| A friend to fetch your data files.

| link:https://src.fedoraproject.org/rpms/pre-commit[pre-commit]
| `sudo dnf install pre-commit`
| Framework for managing and maintaining multi-language pre-commit hooks.

| link:https://src.fedoraproject.org/rpms/python-progressbar2[progressbar2]
| `sudo dnf install python3-progressbar2`
| A Progressbar library to provide visual progress to long running operations.

| link:https://src.fedoraproject.org/rpms/python-pulp[PuLP]
| `sudo dnf install python3-pulp`
| A python Linear Programming API.

| link:https://src.fedoraproject.org/rpms/python-pyedflib[pyedflib]
| `sudo dnf install python3-pyedflib`
| Python library to read/write EDF+/BDF+ files, based on EDFlib.

| link:https://src.fedoraproject.org/rpms/python-pypet[pypet]
| `sudo dnf install python3-pypet`
| Parameter exploration toolbox.

| link:https://src.fedoraproject.org/rpms/pyplane[pyplane]
| `sudo dnf install pyplane`
| Phase plane analysis of nonlinear systems

| link:https://src.fedoraproject.org/rpms/python-ratelimiter[ratelimiter]
| `sudo dnf install python3-ratelimiter`
| Python module providing rate limiting.

| link:https://src.fedoraproject.org/rpms/python-rdflib-jsonld[RDFlib-JSON-LD]
| `sudo dnf install python3-rdflib-jsonld`
| Python rdflib extension adding JSON-LD parser and serializer.

| link:https://src.fedoraproject.org/rpms/python-sklearn-nature-inspired-algorithms[Sklearn-nature-inspired-algorithms]
| `sudo dnf install python3-sklearn-nature-inspired-algorithms`
| Nature-inspired algorithms for hyper-parameter tuning of Scikit-Learn models.

| link:https://src.fedoraproject.org/rpms/snakemake[snakemake]
| `sudo dnf install snakemake`
| Workflow management system to create reproducible and scalable data analyses.

| link:https://src.fedoraproject.org/rpms/spyder[spyder]
| `sudo dnf install spyder`
| A powerful scientific environment written in Python, for Python, and designed by and for scientists, engineers and data analysts.

| link:https://src.fedoraproject.org/rpms/python-stopit[stopit]
| `sudo dnf install python3-stopit`
| Timeout control decorator and context managers.

| link:https://src.fedoraproject.org/rpms/python-toposort[toposort]
| `sudo dnf install python3-toposort`
| Implements a topological sort algorithm.

| link:https://src.fedoraproject.org/rpms/R-vcd[vcd]
| `sudo dnf install R-vcd`
| Visualizing categorical data.

| link:https://src.fedoraproject.org/rpms/python-wxnatpy[wxnatpy]
| `sudo dnf install python3-wxnatpy`
| wxnatpy is a wxPython widget which allows users to browse the contents of a XNAT repository.

| link:https://src.fedoraproject.org/rpms/python-xnat[xnat]
| `sudo dnf install python3-xnat`
| A new XNAT client that exposes XNAT objects/functions as python objects/functions.

| link:https://src.fedoraproject.org/rpms/octave-zmat[ZMat]
| `sudo dnf install octave-zmat`
| A portable data compression/decompression toolbox for GNU Octave.

| link:https://src.fedoraproject.org/rpms/zmat[ZMat Library]
| `sudo dnf install zmat`
| A portable library with easy-to-use data compression/decompression interfaces.

 
a month ago
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fedora-docs-l10n/neurofedora / master/pages/installing-software — French

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