|
| link:https://src.fedoraproject.org/rpms/python-amply[amply]
| `sudo dnf install python3-amply`
| A Python package for AMPL/GMPL datafile parsing.
| link:https://src.fedoraproject.org/rpms/R-arules[arules]
| `sudo dnf install R-arules`
| Provides the infrastructure for representing, manipulating and analyzing transaction data and patterns.
| link:https://src.fedoraproject.org/rpms/octave-brain2mesh[brain2mesh]
| `sudo dnf install octave-brain2mesh`
| A fully automated high-quality brain tetrahedral mesh generation toolbox.
| link:https://src.fedoraproject.org/rpms/catch22[catch22]
| `sudo dnf install catch22 python3-catch22`
| catch22 is a collection of 22 time-series features coded in C.
| link:https://src.fedoraproject.org/rpms/python-contextualbandits[contextualbandits]
| `sudo dnf install python3-contextualbandits`
| Python implementations of contextual bandits algorithms.
| link:https://src.fedoraproject.org/rpms/python-cyipopt[cyipopt]
| `sudo dnf install python3-cyipopt`
| Cython interface for the interior point optimzer IPOPT.
| link:https://src.fedoraproject.org/rpms/python-editdistance[editdistance]
| `sudo dnf install python3-editdistance`
| A fast implementation of the edit distance (Levenshtein distance) in Python.
| link:https://src.fedoraproject.org/rpms/python-efel[efel]
| `sudo dnf install python3-efel`
| Electrophys Feature Extraction Library.
| link:https://src.fedoraproject.org/rpms/python-elephant[elephant]
| `sudo dnf install python3-elephant`
| A package for analysis of electrophysiology data in Python.
| link:https://src.fedoraproject.org/rpms/fasttrack[FastTrack]
| `sudo dnf install fasttrack fasttrack-cli`
| Application designed to track multiple objects in video recording.
| link:https://src.fedoraproject.org/rpms/python-identify[identify]
| `sudo dnf install python3-identify`
| File identification library for Python.
| link:https://src.fedoraproject.org/rpms/octave-iso2mesh[iso2mesh]
| `sudo dnf install octave-iso2mesh`
| A medical-image based 3-D mesh generation and analysis toolkit.
| link:https://src.fedoraproject.org/rpms/octave-mcxlab[mcxlab]
| `sudo dnf install octave-mcxlab`
| A 3-D Monte Carlo photon transport simulation toolbox.
| link:https://src.fedoraproject.org/rpms/python-meautility[MEAUtility]
| `sudo dnf install python-meautility`
| Python package for multi-electrode array (MEA) handling and stimulation.
| link:https://src.fedoraproject.org/rpms/mmc[mmc]
| `sudo dnf install mmc octave-mmclab mmc-demos mmclab-demos`
| A 3-D mesh-based Monte Carlo photon transport simulator.
| link:https://src.fedoraproject.org/rpms/python-mne[mne]
| `sudo dnf install python3-mne`
| Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis.
| link:https://src.fedoraproject.org/rpms/python-nashpy[Nashpy]
| `sudo dnf install python3-nashpy`
| A library for the computation of Nash equilibria in two player games.
| link:https://src.fedoraproject.org/rpms/python-neurodsp[neurodsp]
| `sudo dnf install python3-neurodsp`
| A Python package to analyze and simulate neural time series, using digital signal processing.
| link:https://src.fedoraproject.org/rpms/python-neurosynth[neurosynth]
| `sudo dnf install python3-neurosynth`
| Large-scale synthesis of functional neuroimaging data.
| link:https://src.fedoraproject.org/rpms/python-niaaml[NiaAML]
| `sudo dnf install python3-niaaml`
| AutoML in Python.
| link:https://src.fedoraproject.org/rpms/python-niaarm[NiaARM]
| `sudo dnf install python3-niaarm`
| A minimalistic framework for Numerical Association Rule Mining.
| link:https://src.fedoraproject.org/rpms/python-niaclass[NiaClass]
| `sudo dnf install python3-niaclass`
| Framework for solving classification tasks using nature-inspired algorithms.
| link:https://src.fedoraproject.org/rpms/python-niapy[NiaPy]
| `sudo dnf install python3-niapy`
| A Python package for solving optimization problems.
| link:https://src.fedoraproject.org/rpms/python-nitime[nitime]
| `sudo dnf install python3-nitime`
| Timeseries analysis for neuroscience data.
| link:https://src.fedoraproject.org/rpms/python-odml[odML]
| `sudo dnf install python3-odml`
| File-format to store metadata in an organized way.
| link:https://src.fedoraproject.org/rpms/openmeeg[openmeeg]
| `sudo dnf install openmeeg`
| A C++ package for solving the forward problems of electroencephalography (EEG) and magnetoencephalography (MEG).
| link:https://src.fedoraproject.org/rpms/python-pingouin[pingouin]
| `sudo dnf install python3-pingouin`
| Statistical package in Python based on Pandas.
| link:https://src.fedoraproject.org/rpms/python-probeinterface[probeinterface]
| `sudo dnf install python3-probeinterface`
| Python package to handle probe layout, geometry and wiring to device for neuroscience experiments.
| link:https://src.fedoraproject.org/rpms/python-pyelectro[pyelectro]
| `sudo dnf install python3-pyelectro`
| A Python library for analysis of electrophysiological data.
| link:https://src.fedoraproject.org/rpms/python-pynwb[pynwb]
| `sudo dnf install python3-pynwb`
| A Python package for working with NWB files.
| link:https://src.fedoraproject.org/rpms/python-pyspike[PySpike]
| `sudo dnf install python3-pyspike`
| A Python library for the numerical analysis of spiketrain similarity
| link:https://src.fedoraproject.org/rpms/python-pyswarms[pyswarms]
| `sudo dnf install python3-pyswarms`
| PySwarms is an extensible research toolkit for particle swarm optimization (PSO) in Python.
| link:https://src.fedoraproject.org/rpms/python-pyunicorn[pyunicorn]
| `sudo dnf install python3-pyunicorn`
| Unified complex network and recurrence analysis toolbox
| link:https://src.fedoraproject.org/rpms/python-SALib[SALib]
| `sudo dnf install python3-SALib`
| Sensitivity Analysis Library.
| link:https://src.fedoraproject.org/rpms/shybrid[shybrid]
| `sudo dnf install shybrid`
| GUI for generating hybrid ground-truth spiking data
| link:https://src.fedoraproject.org/rpms/python-sklearn-genetic[sklearn-genetic]
| `sudo dnf install python3-sklearn-genetic`
| A genetic feature selection module for scikit-learn.
| link:https://src.fedoraproject.org/rpms/python-smart_open[smart_open]
| `sudo dnf install python3-smart_open`
| Utils for streaming large files (S3, HDFS, gzip, bz2, and more).
| link:https://src.fedoraproject.org/rpms/python-spyking-circus[Spyking circus]
| `sudo dnf install python3-spyking-circus{-mpich,-openmpi}`
| A fast and scalable solution for spike sorting of large-scale extracellular recordings.
| link:https://src.fedoraproject.org/rpms/python-trimesh[trimesh]
| `sudo dnf install python3-trimesh`
| Import, export, process, analyze and view triangular meshes.
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Software for data-analysis
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Software that is in the queue for inclusion is listed link:https://pagure.io/neuro-sig/NeuroFedora/issues?tags=F%3A+Data+Analysis[here].
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The following tools are among the software currently available in NeuroFedora:
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